MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Borrelia burgdorferi JD1 plasmid JD1 cp26

Total Repeats: 126

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017395	TA	3	6	761	766	50 %	50 %	0 %	0 %	Non-Coding
2	NC_017395	TTA	2	6	772	777	33.33 %	66.67 %	0 %	0 %	Non-Coding
3	NC_017395	AT	3	6	804	809	50 %	50 %	0 %	0 %	Non-Coding
4	NC_017395	A	7	7	827	833	100 %	0 %	0 %	0 %	Non-Coding
5	NC_017395	A	6	6	2230	2235	100 %	0 %	0 %	0 %	Non-Coding
6	NC_017395	A	7	7	2247	2253	100 %	0 %	0 %	0 %	Non-Coding
7	NC_017395	TA	3	6	2260	2265	50 %	50 %	0 %	0 %	Non-Coding
8	NC_017395	TTAAA	2	10	2266	2275	60 %	40 %	0 %	0 %	Non-Coding
9	NC_017395	TA	3	6	2277	2282	50 %	50 %	0 %	0 %	Non-Coding
10	NC_017395	ATA	2	6	2299	2304	66.67 %	33.33 %	0 %	0 %	Non-Coding
11	NC_017395	TTA	2	6	2342	2347	33.33 %	66.67 %	0 %	0 %	Non-Coding
12	NC_017395	ATA	2	6	2362	2367	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_017395	TAAA	2	8	2380	2387	75 %	25 %	0 %	0 %	Non-Coding
14	NC_017395	A	7	7	2402	2408	100 %	0 %	0 %	0 %	Non-Coding
15	NC_017395	CT	3	6	2426	2431	0 %	50 %	0 %	50 %	Non-Coding
16	NC_017395	A	7	7	2468	2474	100 %	0 %	0 %	0 %	Non-Coding
17	NC_017395	TCC	2	6	3810	3815	0 %	33.33 %	0 %	66.67 %	Non-Coding
18	NC_017395	TAAT	2	8	3838	3845	50 %	50 %	0 %	0 %	Non-Coding
19	NC_017395	TAT	2	6	3859	3864	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_017395	TC	3	6	3876	3881	0 %	50 %	0 %	50 %	Non-Coding
21	NC_017395	TAAT	2	8	3904	3911	50 %	50 %	0 %	0 %	Non-Coding
22	NC_017395	TAA	2	6	3927	3932	66.67 %	33.33 %	0 %	0 %	Non-Coding
23	NC_017395	TAAT	2	8	3940	3947	50 %	50 %	0 %	0 %	Non-Coding
24	NC_017395	ATA	2	6	3955	3960	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_017395	AT	3	6	3974	3979	50 %	50 %	0 %	0 %	Non-Coding
26	NC_017395	TAA	2	6	3983	3988	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_017395	ATT	2	6	3990	3995	33.33 %	66.67 %	0 %	0 %	Non-Coding
28	NC_017395	AT	3	6	4004	4009	50 %	50 %	0 %	0 %	Non-Coding
29	NC_017395	TATAA	2	10	4012	4021	60 %	40 %	0 %	0 %	Non-Coding
30	NC_017395	AT	3	6	4032	4037	50 %	50 %	0 %	0 %	Non-Coding
31	NC_017395	ATA	2	6	4041	4046	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_017395	ATT	2	6	4050	4055	33.33 %	66.67 %	0 %	0 %	Non-Coding
33	NC_017395	TAAA	2	8	4062	4069	75 %	25 %	0 %	0 %	Non-Coding
34	NC_017395	TAC	2	6	4450	4455	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
35	NC_017395	TAA	2	6	5876	5881	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_017395	AT	3	6	6548	6553	50 %	50 %	0 %	0 %	Non-Coding
37	NC_017395	TAA	2	6	6597	6602	66.67 %	33.33 %	0 %	0 %	Non-Coding
38	NC_017395	ATT	2	6	6623	6628	33.33 %	66.67 %	0 %	0 %	Non-Coding
39	NC_017395	TA	3	6	6653	6658	50 %	50 %	0 %	0 %	Non-Coding
40	NC_017395	CAA	2	6	7753	7758	66.67 %	0 %	0 %	33.33 %	Non-Coding
41	NC_017395	ACTTT	2	10	7760	7769	20 %	60 %	0 %	20 %	Non-Coding
42	NC_017395	T	6	6	7767	7772	0 %	100 %	0 %	0 %	Non-Coding
43	NC_017395	ATA	2	6	8776	8781	66.67 %	33.33 %	0 %	0 %	Non-Coding
44	NC_017395	AAAAT	2	10	10097	10106	80 %	20 %	0 %	0 %	Non-Coding
45	NC_017395	A	6	6	10687	10692	100 %	0 %	0 %	0 %	Non-Coding
46	NC_017395	A	7	7	10712	10718	100 %	0 %	0 %	0 %	Non-Coding
47	NC_017395	TA	3	6	10727	10732	50 %	50 %	0 %	0 %	Non-Coding
48	NC_017395	TA	3	6	10739	10744	50 %	50 %	0 %	0 %	Non-Coding
49	NC_017395	TTG	2	6	10768	10773	0 %	66.67 %	33.33 %	0 %	Non-Coding
50	NC_017395	AAT	2	6	10783	10788	66.67 %	33.33 %	0 %	0 %	Non-Coding
51	NC_017395	AAT	2	6	10842	10847	66.67 %	33.33 %	0 %	0 %	Non-Coding
52	NC_017395	ATTT	2	8	10882	10889	25 %	75 %	0 %	0 %	Non-Coding
53	NC_017395	A	7	7	11440	11446	100 %	0 %	0 %	0 %	Non-Coding
54	NC_017395	ATA	3	9	11463	11471	66.67 %	33.33 %	0 %	0 %	Non-Coding
55	NC_017395	T	6	6	11474	11479	0 %	100 %	0 %	0 %	Non-Coding
56	NC_017395	T	6	6	11514	11519	0 %	100 %	0 %	0 %	Non-Coding
57	NC_017395	ATT	2	6	11533	11538	33.33 %	66.67 %	0 %	0 %	Non-Coding
58	NC_017395	CTT	2	6	11545	11550	0 %	66.67 %	0 %	33.33 %	Non-Coding
59	NC_017395	AT	3	6	11587	11592	50 %	50 %	0 %	0 %	Non-Coding
60	NC_017395	T	6	6	11710	11715	0 %	100 %	0 %	0 %	Non-Coding
61	NC_017395	ATTT	2	8	11730	11737	25 %	75 %	0 %	0 %	Non-Coding
62	NC_017395	T	7	7	11735	11741	0 %	100 %	0 %	0 %	Non-Coding
63	NC_017395	A	6	6	11745	11750	100 %	0 %	0 %	0 %	Non-Coding
64	NC_017395	TAA	2	6	11751	11756	66.67 %	33.33 %	0 %	0 %	Non-Coding
65	NC_017395	TAAA	2	8	11760	11767	75 %	25 %	0 %	0 %	Non-Coding
66	NC_017395	ATAA	2	8	11784	11791	75 %	25 %	0 %	0 %	Non-Coding
67	NC_017395	ATT	2	6	11803	11808	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_017395	T	6	6	11807	11812	0 %	100 %	0 %	0 %	Non-Coding
69	NC_017395	AGCA	2	8	11835	11842	50 %	0 %	25 %	25 %	Non-Coding
70	NC_017395	ATT	2	6	11876	11881	33.33 %	66.67 %	0 %	0 %	Non-Coding
71	NC_017395	ATTTT	2	10	11906	11915	20 %	80 %	0 %	0 %	Non-Coding
72	NC_017395	AAT	2	6	11918	11923	66.67 %	33.33 %	0 %	0 %	Non-Coding
73	NC_017395	TAA	2	6	11935	11940	66.67 %	33.33 %	0 %	0 %	Non-Coding
74	NC_017395	AT	3	6	11963	11968	50 %	50 %	0 %	0 %	Non-Coding
75	NC_017395	AAATTT	2	12	11984	11995	50 %	50 %	0 %	0 %	Non-Coding
76	NC_017395	ATT	2	6	13709	13714	33.33 %	66.67 %	0 %	0 %	Non-Coding
77	NC_017395	ATT	3	9	13720	13728	33.33 %	66.67 %	0 %	0 %	Non-Coding
78	NC_017395	A	7	7	13762	13768	100 %	0 %	0 %	0 %	Non-Coding
79	NC_017395	TATT	2	8	13791	13798	25 %	75 %	0 %	0 %	Non-Coding
80	NC_017395	AGA	2	6	13833	13838	66.67 %	0 %	33.33 %	0 %	Non-Coding
81	NC_017395	T	6	6	13853	13858	0 %	100 %	0 %	0 %	Non-Coding
82	NC_017395	GTTA	2	8	13865	13872	25 %	50 %	25 %	0 %	Non-Coding
83	NC_017395	GATA	2	8	13881	13888	50 %	25 %	25 %	0 %	Non-Coding
84	NC_017395	T	6	6	13889	13894	0 %	100 %	0 %	0 %	Non-Coding
85	NC_017395	AAAT	2	8	16688	16695	75 %	25 %	0 %	0 %	Non-Coding
86	NC_017395	TTA	2	6	16707	16712	33.33 %	66.67 %	0 %	0 %	Non-Coding
87	NC_017395	TTTA	2	8	16720	16727	25 %	75 %	0 %	0 %	Non-Coding
88	NC_017395	TTC	2	6	16792	16797	0 %	66.67 %	0 %	33.33 %	Non-Coding
89	NC_017395	GAA	2	6	16817	16822	66.67 %	0 %	33.33 %	0 %	Non-Coding
90	NC_017395	A	6	6	16827	16832	100 %	0 %	0 %	0 %	Non-Coding
91	NC_017395	T	6	6	16836	16841	0 %	100 %	0 %	0 %	Non-Coding
92	NC_017395	A	6	6	16847	16852	100 %	0 %	0 %	0 %	Non-Coding
93	NC_017395	TTG	2	6	16866	16871	0 %	66.67 %	33.33 %	0 %	Non-Coding
94	NC_017395	TAA	2	6	16875	16880	66.67 %	33.33 %	0 %	0 %	Non-Coding
95	NC_017395	ATAA	2	8	16884	16891	75 %	25 %	0 %	0 %	Non-Coding
96	NC_017395	AGG	2	6	16894	16899	33.33 %	0 %	66.67 %	0 %	Non-Coding
97	NC_017395	A	6	6	17574	17579	100 %	0 %	0 %	0 %	Non-Coding
98	NC_017395	AAGA	2	8	17610	17617	75 %	0 %	25 %	0 %	Non-Coding
99	NC_017395	T	7	7	17632	17638	0 %	100 %	0 %	0 %	Non-Coding
100	NC_017395	A	6	6	17646	17651	100 %	0 %	0 %	0 %	Non-Coding
101	NC_017395	CAA	2	6	17669	17674	66.67 %	0 %	0 %	33.33 %	Non-Coding
102	NC_017395	TAA	2	6	17738	17743	66.67 %	33.33 %	0 %	0 %	Non-Coding
103	NC_017395	TAA	2	6	17837	17842	66.67 %	33.33 %	0 %	0 %	Non-Coding
104	NC_017395	TAG	2	6	17849	17854	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
105	NC_017395	T	6	6	17924	17929	0 %	100 %	0 %	0 %	Non-Coding
106	NC_017395	T	8	8	17969	17976	0 %	100 %	0 %	0 %	Non-Coding
107	NC_017395	CTC	2	6	19358	19363	0 %	33.33 %	0 %	66.67 %	Non-Coding
108	NC_017395	ATTTT	2	10	19366	19375	20 %	80 %	0 %	0 %	Non-Coding
109	NC_017395	TATT	2	8	19398	19405	25 %	75 %	0 %	0 %	Non-Coding
110	NC_017395	TAA	3	9	19417	19425	66.67 %	33.33 %	0 %	0 %	Non-Coding
111	NC_017395	AT	3	6	19427	19432	50 %	50 %	0 %	0 %	Non-Coding
112	NC_017395	AAT	3	9	20848	20856	66.67 %	33.33 %	0 %	0 %	Non-Coding
113	NC_017395	TTATA	2	10	21886	21895	40 %	60 %	0 %	0 %	Non-Coding
114	NC_017395	TAAAG	2	10	23212	23221	60 %	20 %	20 %	0 %	Non-Coding
115	NC_017395	TAAA	2	8	23222	23229	75 %	25 %	0 %	0 %	Non-Coding
116	NC_017395	TGA	2	6	24542	24547	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
117	NC_017395	ATTT	2	8	24586	24593	25 %	75 %	0 %	0 %	Non-Coding
118	NC_017395	ATTTA	2	10	24598	24607	40 %	60 %	0 %	0 %	Non-Coding
119	NC_017395	AAT	2	6	24609	24614	66.67 %	33.33 %	0 %	0 %	Non-Coding
120	NC_017395	T	6	6	24691	24696	0 %	100 %	0 %	0 %	Non-Coding
121	NC_017395	A	6	6	24767	24772	100 %	0 %	0 %	0 %	Non-Coding
122	NC_017395	TAT	2	6	24793	24798	33.33 %	66.67 %	0 %	0 %	Non-Coding
123	NC_017395	ATTA	2	8	24803	24810	50 %	50 %	0 %	0 %	Non-Coding
124	NC_017395	TAAT	3	12	24814	24825	50 %	50 %	0 %	0 %	Non-Coding
125	NC_017395	TAA	2	6	24833	24838	66.67 %	33.33 %	0 %	0 %	Non-Coding
126	NC_017395	ATATA	2	10	26491	26500	60 %	40 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.